Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PHC3 ENSSSCG00000030467

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Description

polyhomeotic homolog 3 [Source:VGNC Symbol;Acc:VGNC:91372]

Location

Primary_assembly 13: 108,776,220-108,883,572 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 7 transcripts (splice variants), 256 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057064.2	PHC3-204	8696	1011aa	ENSSSCP00000047757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AV02 A0A8D1UBF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000038072.3	PHC3-206	8641	991aa	ENSSSCP00000038866.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A500	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000063470.2	PHC3-203	8597	978aa	ENSSSCP00000040857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AAD6	-
ENSSSCT00000040331.3	PHC3-202	8487	942aa	ENSSSCP00000047408.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ATK4 A0A8D1MQ44	-
ENSSSCT00000027451.3	PHC3-207	6167	995aa	ENSSSCP00000024352.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1UBD5 I3LJU0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000104977.1	PHC3-205	4129	909aa	ENSSSCP00000077289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1IFD5 A0A8W4FD17	-
ENSSSCT00000077628.2	PHC3-201	484	150aa	ENSSSCP00000074421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V9J5 A0A5G2RNI1	-

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Summary

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