Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: KCNU1 ENSSSCG00000029131

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Description

potassium calcium-activated channel subfamily U member 1 [Source:VGNC Symbol;Acc:VGNC:95898]

Location

Primary_assembly 15: 49,316,673-49,444,385 reverse strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 5 transcripts (splice variants), 108 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000092357.1	KCNU1-203	3246	1081aa	ENSSSCP00000075829.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F976	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSSSCT00000029952.3	KCNU1-201	3177	1058aa	ENSSSCP00000024893.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LLC5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000094597.1	KCNU1-202	3153	1050aa	ENSSSCP00000080185.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FPF3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000093362.1	KCNU1-204	3153	1050aa	ENSSSCP00000078008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FI66	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000044994.3	KCNU1-205	3030	1009aa	ENSSSCP00000048908.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AXP7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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