Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: VPS54 ENSSSCG00000027509

.

Description

VPS54 subunit of GARP complex [Source:VGNC Symbol;Acc:VGNC:94862]

Location

Primary_assembly 3: 77,856,138-77,975,429 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 2 transcripts (splice variants) and 206 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000054111.3	VPS54-202	4430	977aa	ENSSSCP00000032215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZL70 A0A4X1WB22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000073694.1	VPS54-201	2838	815aa	ENSSSCP00000074549.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WC89 A0A5G2RHB5	-

.

Summary

.

.