Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CNIH1 ENSSSCG00000027256

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Description

cornichon family AMPA receptor auxiliary protein 1 [Source:VGNC Symbol;Acc:VGNC:86820]

Location

Primary_assembly 1: 183,810,849-183,829,207 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 154 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000087760.2	CNIH1-202	6634	152aa	ENSSSCP00000062844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QL94 A0A8D1Q081	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000022519.4	CNIH1-203	6594	136aa	ENSSSCP00000019464.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WD44 I3L613	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000050324.3	CNIH1-204	4989	121aa	ENSSSCP00000039570.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A6G3 A0A4X1WDB0	-
ENSSSCT00000070276.2	CNIH1-201	1428	96aa	ENSSSCP00000064939.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W7S9 A0A5G2R310	-

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Summary

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