Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: STK39 ENSSSCG00000022496

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Description

serine/threonine kinase 39 [Source:VGNC Symbol;Acc:VGNC:98348]

Location

Primary_assembly 15: 74,447,787-74,758,122 reverse strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000076458.1	STK39-205	3516	582aa	ENSSSCP00000070418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZU5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000076934.2	STK39-203	6718	541aa	ENSSSCP00000060863.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q9A2 A0A8D2C1E4	-
ENSSSCT00000030087.4	STK39-204	3111	502aa	ENSSSCP00000024031.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LIX4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000030157.4	STK39-201	2886	469aa	ENSSSCP00000022738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LF98	-
ENSSSCT00000069974.2	STK39-202	1872	526aa	ENSSSCP00000059639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QC66 A0A8D2BHV3	-

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Summary

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