Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: CARF ENSSSCG00000016117

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Description

calcium responsive transcription factor [Source:VGNC Symbol;Acc:VGNC:95615]

Location

Primary_assembly 15: 106,410,491-106,466,799 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 3 transcripts (splice variants) and 172 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038096.3	CARF-203	5860	696aa	ENSSSCP00000042414.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AEL0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000050182.3	CARF-202	2242	660aa	ENSSSCP00000053940.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BBM9	-
ENSSSCT00000049286.3	CARF-201	1922	620aa	ENSSSCP00000036394.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZY06	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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