Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: L1CAM ENSSSCG00000012787

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Description

L1 cell adhesion molecule [Source:UniProtKB Gene Name;Acc:K7GN08]

Location

Primary_assembly X: 124,595,651-124,618,269 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 4 transcripts (splice variants), 243 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000082165.3	L1CAM-204	4691	1256aa	ENSSSCP00000062478.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QE80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000068258.2	L1CAM-203	4944	1252aa	ENSSSCP00000062850.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QF75	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000094818.1	L1CAM-202	4749	1248aa	ENSSSCP00000079101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FI28	-
ENSSSCT00000034202.4	L1CAM-201	4704	1233aa	ENSSSCP00000029257.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GN08	-

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Summary

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