Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL8A1 ENSSSCG00000011973

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Description

collagen type VIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86880]

Location

Primary_assembly 13: 159,216,144-159,374,576 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants), 239 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000081405.1	COL8A1-201	2835	759aa	ENSSSCP00000070722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2Z9 A0A8D0VZ59	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000046576.3	COL8A1-202	5256	744aa	ENSSSCP00000039945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0PXW0 F1SKX7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000086899.1	COL8A1-203	5143	730aa	ENSSSCP00000063419.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QGJ6 A0A8D1E677	-

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Summary

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