Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CHL1 ENSSSCG00000011524

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Description

cell adhesion molecule L1 like [Source:VGNC Symbol;Acc:VGNC:108639]

Location

Primary_assembly 13: 56,804,555-57,034,181 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 4 transcripts (splice variants), 136 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000063183.3	CHL1-203	7410	1225aa	ENSSSCP00000047066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ASJ8 A0A8D1A718	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000053053.2	CHL1-202	7296	1209aa	ENSSSCP00000033713.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQI5 A0A8D1A2W9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000038210.3	CHL1-204	7182	1147aa	ENSSSCP00000046049.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AQ76 A0A8D1RED4	-
ENSSSCT00000051785.3	CHL1-201	7172	1165aa	ENSSSCP00000037151.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZZM6 A0A8D1U6M6	-

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Summary

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