Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: COL17A1 ENSSSCG00000010607

.

Description

collagen type XVII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86868]

Location

Primary_assembly 14: 114,959,411-115,064,783 reverse strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 3 transcripts (splice variants), 98 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000031881.4	COL17A1-201	5815	1473aa	ENSSSCP00000024166.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LJA8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000023894.4	COL17A1-202	5569	1391aa	ENSSSCP00000027778.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LUH8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000091928.1	COL17A1-203	1991	418aa	ENSSSCP00000078111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TNZ8 A0A8W4FGV8	-

.

Summary

.

.