Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
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ID History
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Gene: THSD1 ENSSSCG00000009377

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Description

thrombospondin type 1 domain containing 1 [Source:VGNC Symbol;Acc:VGNC:93966]

Location

Primary_assembly 11: 15,668,813-15,697,872 reverse strand.

Sscrofa11.1:CM000822.5

About this gene

This gene has 3 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010274.4	THSD1-201	2757	858aa	ENSSSCP00000010006.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RMD4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000040959.2	THSD1-203	3000	796aa	ENSSSCP00000052792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9M5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000051890.3	THSD1-202	2598	805aa	ENSSSCP00000049132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZ35	-

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Summary

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