Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SLC12A5 ENSSSCG00000007437

.

Description

solute carrier family 12 member 5 [Source:VGNC Symbol;Acc:VGNC:95594]

Location

Primary_assembly 17: 48,192,075-48,230,661 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 4 transcripts (splice variants), 140 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000045876.3	SLC12A5-204	5992	1139aa	ENSSSCP00000036961.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZZQ4 A0A4X1U489	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000066273.2	SLC12A5-202	6161	1116aa	ENSSSCP00000058969.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BS17 A0A4X1U3U5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000044522.3	SLC12A5-203	6071	1086aa	ENSSSCP00000034582.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZSH8 A0A8D1BK49	-
ENSSSCT00000087230.1	SLC12A5-201	955	180aa	ENSSSCP00000068432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U4G2 A0A5G2R2K8	-

.

Summary

.

.