Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL11A1 ENSSSCG00000006857

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Description

collagen type XI alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:86862]

Location

Primary_assembly 4: 115,634,172-115,840,708 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 5 transcripts (splice variants), 296 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000076022.2	COL11A1-202	6328	1816aa	ENSSSCP00000072487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RKA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000007510.5	COL11A1-203	6292	1804aa	ENSSSCP00000007311.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S571	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000087985.2	COL11A1-204	6175	1765aa	ENSSSCP00000063714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QH98	-
ENSSSCT00000075689.2	COL11A1-205	5944	1688aa	ENSSSCP00000074208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RGP6	-
ENSSSCT00000050349.3	COL11A1-201	2608	768aa	ENSSSCP00000064577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QJD3	-

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Summary

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