Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDZK1 ENSSSCG00000006693

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Description

PDZ domain containing 1 [Source:VGNC Symbol;Acc:VGNC:98832]

Location

Primary_assembly 4: 99,625,080-99,657,161 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000007332.3	PDZK1-202	2370	516aa	ENSSSCP00000007137.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SL39 F1SDD5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000056199.2	PDZK1-203	2249	480aa	ENSSSCP00000053364.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAJ3 A0A4X1SKZ2	-
ENSSSCT00000077146.1	PDZK1-204	2037	405aa	ENSSSCP00000065059.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SL11 A0A5G2R3D7	-
ENSSSCT00000030375.4	PDZK1-201	1551	516aa	ENSSSCP00000024258.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1JN15 I3LJJ8	-

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Summary

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