Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL9A1 ENSSSCG00000004274

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Description

collagen type IX alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:109528]

Location

Primary_assembly 1: 50,403,361-50,498,332 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 2 transcripts (splice variants), 197 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000073708.2	COL9A1-202	3238	922aa	ENSSSCP00000062071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QD63 A0A8D0XSJ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000004723.5	COL9A1-201	2885	691aa	ENSSSCP00000004615.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8X9AEQ8	-

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Summary

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