Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: KDM1A ENSSSCG00000003531

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Description

lysine demethylase 1A [Source:VGNC Symbol;Acc:VGNC:89408]

Location

Primary_assembly 6: 80,903,424-80,971,873 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 213 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000003923.5	KDM1A-201	3072	875aa	ENSSSCP00000003833.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1STX7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000062834.3	KDM1A-202	3066	873aa	ENSSSCP00000040481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A9K0 A0A4X1VZQ2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000003922.5	KDM1A-203	2877	810aa	ENSSSCP00000003832.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W291 F1STX8	-

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Summary

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