Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCNX1 ENSSSCG00000002330

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Description

pecanex 1 [Source:VGNC Symbol;Acc:VGNC:91224]

Location

Primary_assembly 7: 94,445,270-94,614,213 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 3 transcripts (splice variants), 207 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057905.3	PCNX1-202	8218	2342aa	ENSSSCP00000055836.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A481AN16 A0A4X1U2V2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000054657.3	PCNX1-203	7900	2236aa	ENSSSCP00000057079.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BLZ0 A0A4X1U070	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000002593.5	PCNX1-201	6850	2199aa	ENSSSCP00000002529.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0Z7F0 F1S493	-

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Summary

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