Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CNTN1 ENSSSCG00000000789

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Description

contactin 1 [Source:VGNC Symbol;Acc:VGNC:86848]

Location

Primary_assembly 5: 72,168,511-72,495,633 forward strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 4 transcripts (splice variants), 278 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000048567.2	CNTN1-204	5853	1018aa	ENSSSCP00000052817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9Q3 A0A4X1U3Q4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000034945.4	CNTN1-203	4818	924aa	ENSSSCP00000028243.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U4A4 A0A5K1UAE2	-
ENSSSCT00000000855.5	CNTN1-201	2459	627aa	ENSSSCP00000000838.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1A8J6 F1SHN1	-
ENSSSCT00000055190.3	CNTN1-202	2296	635aa	ENSSSCP00000058019.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BN20 A0A8D1CYS2	-

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Summary

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