Transcript: ENSRNOT00000064458.4 Pcdh19-201

Description

protocadherin 19 [Source:RGD Symbol;Acc:1565392]

Gene Synonyms

LOC317183, RGD1565392

Location

About this transcript

This transcript has 5 exons, is annotated with 54 domains and features, is associated with 89 variant alleles and maps to 125 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080386.2	Pcdh19-202	6053	1145aa	ENSRNOP00000074621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K8I5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000064458.4	Pcdh19-201	5912	1098aa	ENSRNOP00000062902.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZG18	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 5,912 bps, Translation length: 1,098 residues

Version

ENSRNOT00000064458.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.