Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: APOBEC3D ENSPTRG00000041588

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Description

apolipoprotein B mRNA editing enzyme catalytic subunit 3D [Source:VGNC Symbol;Acc:VGNC:12808]

Location

Chromosome 22: 25,589,017-25,600,642 forward strand.

Pan_tro_3.0:CM000335.3

About this gene

This gene has 5 transcripts (splice variants), 60 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000097865.1	APOBEC3D-202	1185	394aa	ENSPTRP00000065294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RKT3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000105982.1	APOBEC3D-201	1999	386aa	ENSPTRP00000062625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WMP6 G3KJ92	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000090654.1	APOBEC3D-203	609	202aa	ENSPTRP00000090211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TLS9	-
ENSPTRT00000101673.1	APOBEC3D-205	585	194aa	ENSPTRP00000077324.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLF6	-
ENSPTRT00000089101.1	APOBEC3D-204	573	190aa	ENSPTRP00000069841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RYS5 A0A6D2YC53	-

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Summary

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