Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CSMD1 ENSPTRG00000019945

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Description

CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]

Location

Chromosome 8: 3,177,830-5,260,943 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 4 transcripts (splice variants), 219 orthologues and 39 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000101228.1	CSMD1-201	10698	3565aa	ENSPTRP00000067447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRW9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000090557.1	CSMD1-202	10695	3564aa	ENSPTRP00000063142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RFI2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000091408.1	CSMD1-203	10167	3388aa	ENSPTRP00000076447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SHH2	-
ENSPTRT00000036978.5	CSMD1-204	10050	3349aa	ENSPTRP00000034173.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QVP9	-

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Summary

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