Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RAPGEF2 ENSPTRG00000016558

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Description

Rap guanine nucleotide exchange factor 2 [Source:VGNC Symbol;Acc:VGNC:670]

Location

Chromosome 4: 162,998,824-163,257,608 forward strand.

Pan_tro_3.0:CM000318.3

About this gene

This gene has 5 transcripts (splice variants), 223 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000085490.1	RAPGEF2-202	7226	1701aa	ENSPTRP00000079253.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SQG1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000030778.6	RAPGEF2-203	7103	1660aa	ENSPTRP00000028421.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QQD2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081226.1	RAPGEF2-201	5061	1654aa	ENSPTRP00000079509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SRC8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000083522.1	RAPGEF2-205	4830	1499aa	ENSPTRP00000084275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4W5 A0A6D2X992	-
ENSPTRT00000107720.1	RAPGEF2-204	4509	1497aa	ENSPTRP00000073657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S9Z8	-

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Summary

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