Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL1A1 ENSPTRG00000009393

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Description

collagen type I alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:51645]

Location

Chromosome 17: 49,303,111-49,320,687 reverse strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 2 transcripts (splice variants), 252 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000017231.5	COL1A1-201	5959	1464aa	ENSPTRP00000015952.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y675 H2QDE6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000087481.1	COL1A1-202	3960	1319aa	ENSPTRP00000078048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SM98	-

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Summary

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