Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX1 ENSPTRG00000007154

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Description

sorting nexin 1 [Source:VGNC Symbol;Acc:VGNC:1875]

Location

Chromosome 15: 44,936,202-44,978,872 forward strand.

Pan_tro_3.0:CM000329.3

About this gene

This gene has 5 transcripts (splice variants), 266 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000110187.1	SNX1-202	1802	557aa	ENSPTRP00000093339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TVU4 A0A6D2WMB6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000013204.4	SNX1-201	1697	522aa	ENSPTRP00000012232.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X1R5 H2Q9K4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000093029.1	SNX1-204	1509	502aa	ENSPTRP00000064708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJ46	-
ENSPTRT00000109629.1	SNX1-205	1374	457aa	ENSPTRP00000076702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SI77 A0A6D2WBG3	-
ENSPTRT00000101614.1	SNX1-203	324	107aa	ENSPTRP00000080486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8NRQ4 A0A6D2WK25	-

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Summary

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