LIM domain 7 [Source:VGNC Symbol;Acc:VGNC:13124]
Chromosome 13: 60,894,773-61,209,158 forward strand.
Pan_tro_3.0:CM000327.3
This gene has 10 transcripts (splice variants), 334 orthologues and 1 paralogue.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000091894.1 | LMO7-203 | 5796 | 1668aa | ENSPTRP00000088174.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TH23 A0A6D2WZT5 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000096932.1 | LMO7-206 | 5996 | 1631aa | ENSPTRP00000074339.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SBW9 A0A6D2WMI0 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000086930.1 | LMO7-205 | 4962 | 1653aa | ENSPTRP00000075928.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SGA0 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000106544.1 | LMO7-210 | 4823 | 1385aa | ENSPTRP00000078770.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SP66 A0A6D2XE75 | - |
| ENSPTRT00000087011.1 | LMO7-204 | 4794 | 1349aa | ENSPTRP00000091512.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TQM6 A0A6D2WW88 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000091667.1 | LMO7-208 | 3828 | 1275aa | ENSPTRP00000067506.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RT60 A0A6D2WW18 | - |
| ENSPTRT00000010894.5 | LMO7-207 | 3825 | 1274aa | ENSPTRP00000010086.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H2Q7N3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000106464.1 | LMO7-202 | 1920 | 639aa | ENSPTRP00000063197.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RFP5 | - |
| ENSPTRT00000060146.3 | LMO7-201 | 1113 | 230aa | ENSPTRP00000053459.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H2RA26 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSPTRT00000108430.1 | LMO7-209 | 747 | 248aa | ENSPTRP00000069630.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RY28 | - |
