Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL2A1 ENSPTRG00000004871

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Description

collagen type II alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:10704]

Location

Chromosome 12: 41,956,600-41,988,366 forward strand.

Pan_tro_3.0:CM000326.3

About this gene

This gene has 2 transcripts (splice variants), 189 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000044757.4	COL2A1-202	5319	1487aa	ENSPTRP00000041995.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XB18 H2R193	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000009015.4	COL2A1-201	5113	1418aa	ENSPTRP00000008327.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XVX7 H2Q5S8	-

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Summary

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