protein tyrosine phosphatase non-receptor type 20 [Source:VGNC Symbol;Acc:VGNC:84271]
Chromosome 10: 48,361,991-48,452,463 reverse strand.
Pan_tro_3.0:CM000324.3
This gene has 8 transcripts (splice variants), 207 orthologues and 40 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000097099.1 | PTPN20-202 | 3610 | 420aa | ENSPTRP00000072955.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3S7C7 A0A663DC59 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000060459.2 | PTPN20-203 | 3062 | 411aa | ENSPTRP00000053850.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A663DFE4 H2RAG3 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSPTRT00000082108.1 | PTPN20-201 | 2806 | 145aa | ENSPTRP00000066201.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RNC4 A0A663D8J8 | - |
| ENSPTRT00000081889.1 | PTPN20-204 | 2668 | 226aa | ENSPTRP00000082992.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2J8JGI3 A0A663D6U9 | - |
| ENSPTRT00000096548.1 | PTPN20-205 | 2577 | 206aa | ENSPTRP00000090001.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3TL78 A0A663D9B9 | - |
| ENSPTRT00000105569.1 | PTPN20-206 | 1260 | 419aa | ENSPTRP00000069553.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RXW0 | - |
| ENSPTRT00000089930.1 | PTPN20-207 | 810 | 269aa | ENSPTRP00000076081.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SGG7 A0A663D7V2 | - |
| ENSPTRT00000099376.1 | PTPN20-208 | 687 | 228aa | ENSPTRP00000063983.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RHX3 A0A663DGW3 | - |
