Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN22 ENSPTRG00000001125

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Description

protein tyrosine phosphatase non-receptor type 22 [Source:VGNC Symbol;Acc:VGNC:9886]

Location

Chromosome 1: 122,016,544-122,076,497 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 7 transcripts (splice variants), 127 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088151.1	PTPN22-201	5795	807aa	ENSPTRP00000075407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEU6 A0A6D2WLD8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000002108.4	PTPN22-202	3788	783aa	ENSPTRP00000001934.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WGX6 H2PZP7	-
ENSPTRT00000104973.1	PTPN22-206	2262	753aa	ENSPTRP00000091879.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TRL1	-
ENSPTRT00000106488.1	PTPN22-207	2259	752aa	ENSPTRP00000066816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQ33 A0A6D2WLS0	-
ENSPTRT00000089712.1	PTPN22-205	2007	668aa	ENSPTRP00000076139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SGW8 A0A6D2WUM8	-
ENSPTRT00000096549.1	PTPN22-204	540	179aa	ENSPTRP00000085707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T904 A0A6D2W308	-
ENSPTRT00000079599.1	PTPN22-203	408	135aa	ENSPTRP00000066598.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQJ9 A0A6D2XEM1	-

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Summary

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