Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL16A1 ENSPTRG00000000464

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Description

collagen type XVI alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:10677]

Location

Chromosome 1: 30,936,539-30,988,323 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 2 transcripts (splice variants), 106 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000000906.5	COL16A1-201	5476	1604aa	ENSPTRP00000000810.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XF89 K7BGM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000084895.1	COL16A1-202	3987	1328aa	ENSPTRP00000064974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJW2	-

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Summary

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