Transcript: ENST00000397537.3 SMCO1-201

Description

single-pass membrane protein with coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:27407]

Gene Synonyms

C3ORF43, DKFZP313B0440, FLJ41923

Location

Chromosome 3: 196,506,879-196,515,346 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 4282 variant alleles and maps to 202 oligo probes.

Gene

This transcript is a product of gene ENSG00000214097.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000397537.3	SMCO1-201	1790	214aa	ENSP00000380671.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43192	Q147U7	NM_001077657.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000452776.1	SMCO1-202	1846	36aa	ENSP00000413102.1	Nonsense mediated decay		F8WEP5	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Transcript: ENST00000397537.3 SMCO1-201

Protein summary

Protein domains for ENSP00000380671.2

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Transcript: ENST00000397537.3 SMCO1-201

Protein summary

Protein domains for ENSP00000380671.2

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