Transcript: ENST00000317578.7 SIX5-201

Description

SIX homeobox 5 [Source:HGNC Symbol;Acc:HGNC:10891]

Gene Synonyms

DMAHP

Location

Chromosome 19: 45,764,785-45,769,252 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 25 domains and features, is associated with 3482 variant alleles and maps to 397 oligo probes.

Gene

This transcript is a product of gene ENSG00000177045.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000317578.7	SIX5-201	3344	739aa	ENSP00000316842.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12673	Q8N196	NM_175875.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000560168.1	SIX5-203	1975	69aa	ENSP00000453189.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLF6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000560160.1	SIX5-202	1809	255aa	ENSP00000453239.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLK1	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Transcript: ENST00000317578.7 SIX5-201

Protein summary

Protein domains for ENSP00000316842.4

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Transcript: ENST00000317578.7 SIX5-201

Protein summary

Protein domains for ENSP00000316842.4

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