Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL9A1 ENSOCUG00000012367

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Description

collagen type IX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2217]

Location

Chromosome 12: 56,888,867-56,995,534 reverse strand.

OryCun2.0:CM000801.1

About this gene

This gene has 3 transcripts (splice variants), 197 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSOCUT00000012381.4	COL9A1-201	3125	921aa	ENSOCUP00000010658.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G1T368	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSOCUT00000038769.1	COL9A1-202	3113	917aa	ENSOCUP00000035139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSOCUT00000035480.1	COL9A1-203	2691	896aa	ENSOCUP00000043327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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