Transcript: ENSMUST00000237529.2 Smndc1-205

Description

survival motor neuron domain containing 1 [Source:MGI Symbol;Acc:MGI:1923729]

Gene Synonyms

2410004J23Rik, 4933440I19Rik

Location

Chromosome 19: 53,368,311-53,378,472 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 939 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000025024.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025997.7	Smndc1-201	1948	238aa	ENSMUSP00000025997.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29902	Q8BGT7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237529.2	Smndc1-205	1480	238aa	ENSMUSP00000157540.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29902	Q8BGT7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000236245.2	Smndc1-203	393	83aa	ENSMUSP00000158182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAP9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235830.2	Smndc1-202	1992	145aa	ENSMUSP00000158001.2	Nonsense mediated decay		A0A494BAA2	-
ENSMUST00000236962.2	Smndc1-204	1478	102aa	ENSMUSP00000157887.2	Nonsense mediated decay		A0A494BA53	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,480 bps, Translation length: 238 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8BGT7

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29902

Version

ENSMUST00000237529.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000237529.2 Smndc1-205

Summary

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Transcript: ENSMUST00000237529.2 Smndc1-205

Summary

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