Transcript: ENSMUST00000232686.2 Vapa-202

Description

vesicle-associated membrane protein, associated protein A [Source:MGI Symbol;Acc:MGI:1353561]

Gene Synonyms

VAP33, synaptobrevin-associated protein of 33kDa

Location

Chromosome 17: 65,887,415-65,901,965 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 1154 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024091.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024897.10	Vapa-201	3369	249aa	ENSMUSP00000024897.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37677	Q9WV55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232686.2	Vapa-202	979	236aa	ENSMUSP00000156845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W837	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 979 bps, Translation length: 236 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000232686.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000232686.2 Vapa-202

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Transcript: ENSMUST00000232686.2 Vapa-202

Summary

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