Transcript: ENSMUST00000230772.2 Gga1-205

Description

golgi associated, gamma adaptin ear containing, ARF binding protein 1 [Source:MGI Symbol;Acc:MGI:2146207]

Gene Synonyms

4930406E12Rik

Location

Chromosome 15: 78,767,986-78,773,237 forward strand.

About this transcript

This transcript has 6 exons, is associated with 805 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000033128.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000041587.8	Gga1-201	3034	635aa	ENSMUSP00000035992.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27625	Q8R0H9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230192.2	Gga1-203	2665	363aa	ENSMUSP00000155780.2	Nonsense mediated decay		A0A2R8VI72	-
ENSMUST00000230243.2	Gga1-204	393	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230772.2	Gga1-205	860	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229353.2	Gga1-202	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 860 bps,

Version

ENSMUST00000230772.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000230772.2 Gga1-205

Summary

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Transcript: ENSMUST00000230772.2 Gga1-205

Summary

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