Transcript: ENSMUST00000228977.2 Sco2-202

Description

SCO2 cytochrome c oxidase assembly protein [Source:MGI Symbol;Acc:MGI:3818630]

Location

Chromosome 15: 89,255,843-89,258,049 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 531 variant alleles and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091780.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000228977.2	Sco2-202	1250	255aa	ENSMUSP00000155150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49701	Q8VCL2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000167643.4	Sco2-201	1145	255aa	ENSMUSP00000131943.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49701	Q8VCL2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,250 bps, Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VCL2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49701

Version

ENSMUST00000228977.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000228977.2 Sco2-202

Summary

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Transcript: ENSMUST00000228977.2 Sco2-202

Summary

About Us

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