Transcript: ENSMUST00000228717.2 Bin3-205

Description

bridging integrator 3 [Source:MGI Symbol;Acc:MGI:1929883]

Gene Synonyms

1700015F07Rik

Location

Chromosome 14: 70,337,587-70,366,331 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 1462 variant alleles and maps to 54 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022089.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022680.9	Bin3-201	1767	253aa	ENSMUSP00000022680.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27247	Q9JI08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228717.2	Bin3-205	413	39aa	ENSMUSP00000154413.2	Nonsense mediated decay		A0A2I3BR15	-
ENSMUST00000228049.2	Bin3-204	600	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000226385.2	Bin3-202	524	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227841.2	Bin3-203	201	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 413 bps, Translation length: 39 residues

Version

ENSMUST00000228717.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000228717.2 Bin3-205

Summary

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Transcript: ENSMUST00000228717.2 Bin3-205

Summary

About Us

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