Transcript: ENSMUST00000227997.2 Vgll3-202

Description

vestigial like family member 3 [Source:MGI Symbol;Acc:MGI:1920819]

Gene Synonyms

1700110N18Rik, Vito-2

Location

Chromosome 16: 65,612,515-65,658,165 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 3025 variant alleles and maps to 142 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000091243.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168064.3	Vgll3-201	7009	325aa	ENSMUSP00000131500.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49884	E9Q1Y1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227997.2	Vgll3-202	1383	270aa	ENSMUSP00000153843.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPM3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000228708.2	Vgll3-203	1846	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,383 bps, Translation length: 270 residues

Version

ENSMUST00000227997.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000227997.2 Vgll3-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000227997.2 Vgll3-202

Summary

About Us

Get help

Our sister sites

Follow us