Transcript: ENSMUST00000227496.2 Cdh12-203

Description

cadherin 12 [Source:MGI Symbol;Acc:MGI:109503]

Gene Synonyms

Br-cadherin

Location

Chromosome 15: 21,110,211-21,589,619 forward strand.

About this transcript

This transcript has 13 exons, is annotated with 46 domains and features, is associated with 23851 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000040452.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000227496.2	Cdh12-203	6004	794aa	ENSMUSP00000153750.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27396	Q5RJH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000075132.8	Cdh12-201	5636	794aa	ENSMUSP00000074632.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27396	Q5RJH3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226407.2	Cdh12-202	404	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 13, Coding exons: 11, Transcript length: 6,004 bps, Translation length: 794 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RJH3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS27396

Version

ENSMUST00000227496.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000227496.2 Cdh12-203

Summary

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Transcript: ENSMUST00000227496.2 Cdh12-203

Summary

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