Transcript: ENSMUST00000227280.2 4931414P19Rik-202

Description

RIKEN cDNA 4931414P19 gene [Source:MGI Symbol;Acc:MGI:1921609]

Location

Chromosome 14: 54,821,733-54,822,466 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 596 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000022179.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022786.6	4931414P19Rik-201	2670	541aa	ENSMUSP00000022786.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27094	Q8K2W9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227280.2	4931414P19Rik-202	442	39aa	ENSMUSP00000154754.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BS37	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000228422.2	4931414P19Rik-203	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 442 bps, Translation length: 39 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000227280.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000227280.2 4931414P19Rik-202

Summary

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Transcript: ENSMUST00000227280.2 4931414P19Rik-202

Summary

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