Transcript: ENSMUST00000227250.2 Nedd8-203

Description

neural precursor cell expressed, developmentally down-regulated gene 8 [Source:MGI Symbol;Acc:MGI:97301]

Gene Synonyms

Rub1

Location

Chromosome 14: 55,899,721-55,901,318 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 544 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000010376.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000010520.10	Nedd8-201	824	81aa	ENSMUSP00000010520.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49498	P29595 Q3UI46	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227250.2	Nedd8-203	412	18aa	ENSMUSP00000154561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRG0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000228414.2	Nedd8-204	516	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000227157.2	Nedd8-202	791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 412 bps, Translation length: 18 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000227250.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000227250.2 Nedd8-203

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Transcript: ENSMUST00000227250.2 Nedd8-203

Summary

About Us

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