Transcript: ENSMUST00000227147.2 Ero1a-202

Description

endoplasmic reticulum oxidoreductase 1 alpha [Source:MGI Symbol;Acc:MGI:1354385]

Gene Synonyms

Ero1l

Location

Chromosome 14: 45,525,194-45,536,522 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 3 domains and features, is associated with 955 variant alleles and maps to 97 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021831.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022378.9	Ero1a-201	4418	464aa	ENSMUSP00000022378.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36893	Q4FK57 Q8R180	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227147.2	Ero1a-202	686	229aa	ENSMUSP00000153844.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPM1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000227315.2	Ero1a-203	326	64aa	ENSMUSP00000154411.2	Nonsense mediated decay		A0A2I3BRB3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000228564.2	Ero1a-204	489	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000228777.2	Ero1a-205	482	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000228836.2	Ero1a-206	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 686 bps, Translation length: 229 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSMUST00000227147.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000227147.2 Ero1a-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000227147.2 Ero1a-202

Summary

About Us

Get help

Our sister sites

Follow us