Transcript: ENSMUST00000226873.2 Styx-205

Description

serine/threonine/tyrosine interaction protein [Source:MGI Symbol;Acc:MGI:1891150]

Gene Synonyms

0610039A20Rik, STNS (alternatively spliced intron of Styx)

Location

Chromosome 14: 45,588,550-45,622,964 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 9 domains and features, is associated with 1939 variant alleles and maps to 521 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000053205.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000226873.2	Styx-205	12974	223aa	ENSMUSP00000153854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26975	Q60969	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000228818.2	Styx-209	451	66aa	ENSMUSP00000154485.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRI3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226785.2	Styx-204	4168	55aa	ENSMUSP00000154662.2	Nonsense mediated decay		A0A2I3BRP4	-
ENSMUST00000228311.2	Styx-207	2107	223aa	ENSMUSP00000154148.2	Nonsense mediated decay	CCDS26975	Q60969	-
ENSMUST00000226603.2	Styx-203	1889	115aa	ENSMUSP00000154323.2	Nonsense mediated decay		Q5U4H6	-
ENSMUST00000226303.2	Styx-202	1730	52aa	ENSMUSP00000154228.2	Nonsense mediated decay		A0A2I3BQL4	-
ENSMUST00000111835.4	Styx-201	1245	205aa	ENSMUSP00000107466.4	Nonsense mediated decay		A0A2K6EDL3	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228321.2	Styx-208	1267	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227538.2	Styx-206	385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 12,974 bps, Translation length: 223 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q60969

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26975

Version

ENSMUST00000226873.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000226873.2 Styx-205

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Transcript: ENSMUST00000226873.2 Styx-205

Summary

About Us

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