Transcript: ENSMUST00000224432.2 Dsc1-202

Description

desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]

Gene Synonyms

Dsc1a, Dsc1b

Location

Chromosome 18: 20,217,241-20,247,667 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 55 domains and features, is associated with 2145 variant alleles and maps to 327 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044322.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000224432.2	Dsc1-202	4085	886aa	ENSMUSP00000153639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P55849	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000038710.6	Dsc1-201	3775	832aa	ENSMUSP00000042303.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29078	Q32ME9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226115.2	Dsc1-204	663	147aa	ENSMUSP00000153126.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCT9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224557.2	Dsc1-203	2872	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 4,085 bps, Translation length: 886 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55849

Version

ENSMUST00000224432.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000224432.2 Dsc1-202

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Transcript: ENSMUST00000224432.2 Dsc1-202

Summary

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