Transcript: ENSMUST00000224300.2 Lysmd3-202

Description

LysM, putative peptidoglycan-binding, domain containing 3 [Source:MGI Symbol;Acc:MGI:1915906]

Gene Synonyms

1110030H10Rik

Location

Chromosome 13: 81,805,782-81,820,990 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 11 domains and features, is associated with 1284 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000035840.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000224300.2	Lysmd3-202	4250	305aa	ENSMUSP00000152940.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26660	Q99LE3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000049055.8	Lysmd3-201	2338	91aa	ENSMUSP00000038275.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2C9F2A6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000224420.2	Lysmd3-203	600	26aa	ENSMUSP00000152945.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCE3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000224592.2	Lysmd3-204	370	73aa	ENSMUSP00000153026.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCK3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 4,250 bps, Translation length: 305 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99LE3

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26660

Version

ENSMUST00000224300.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000224300.2 Lysmd3-202

Summary

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Transcript: ENSMUST00000224300.2 Lysmd3-202

Summary

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