Transcript: ENSMUST00000222976.2 Calml3-202

Description

calmodulin-like 3 [Source:MGI Symbol;Acc:MGI:1917655]

Gene Synonyms

2310068O22Rik

Location

Chromosome 13: 3,853,485-3,854,062 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 16 domains and features, is associated with 396 variant alleles and maps to 62 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000063130.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000077698.5	Calml3-201	1421	149aa	ENSMUSP00000076880.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26214	Q9D6P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000222976.2	Calml3-202	509	115aa	ENSMUSP00000152735.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1Y7VK66	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 509 bps, Translation length: 115 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000222976.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000222976.2 Calml3-202

Summary

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Transcript: ENSMUST00000222976.2 Calml3-202

Summary

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