Transcript: ENSMUST00000215038.3 Pou2af3-202

Description

POU class 2 homeobox associating factor 3 [Source:MGI Symbol;Acc:MGI:2685530]

Gene Synonyms

Colca2, Gm684, LOC270157, OCA-T2

Location

Chromosome 9: 51,181,558-51,189,854 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 758 variant alleles and maps to 69 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000079559.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239415.2	Pou2af3-203	1124	253aa	ENSMUSP00000159303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPY8-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000114427.4	Pou2af3-201	1263	239aa	ENSMUSP00000110070.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57676	F8VPY8-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000215038.3	Pou2af3-202	1254	239aa	ENSMUSP00000150539.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57676	F8VPY8-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,254 bps, Translation length: 239 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F8VPY8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS57676

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000215038.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000215038.3 Pou2af3-202

Summary

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Transcript: ENSMUST00000215038.3 Pou2af3-202

Summary

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