Mouse (GRCm39)
Description

collagen, type IV, alpha 1 [Source:MGI Symbol;Acc:MGI:88454]

Gene Synonyms

Bru, Col4a-1, Del(8)44H, Del(8)Bru44H, Raw, Svc, alpha1(IV) collagen

Location
About this transcript

This transcript has 53 exons, is associated with 6309 variant alleles and maps to 532 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000033898.10Col4a1-20166151669aaENSMUSP00000033898.10
 
Protein coding
CCDS40219P02463 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000209598.2Col4a1-2061170328aaENSMUSP00000147459.2
 
Protein coding
A0A1B0GRC0 TSL:5CDS 5' incomplete
ENSMUST00000208095.2Col4a1-203545133aaENSMUSP00000146554.2
 
Protein coding
A0A140LHU8 TSL:3CDS 3' incomplete
ENSMUST00000209735.2Col4a1-20864871562aaENSMUSP00000147951.2
 
Nonsense mediated decay
A0A1B0GSI7 TSL:2
ENSMUST00000209661.2Col4a1-207618126aaENSMUSP00000148226.2
 
Nonsense mediated decay
A0A1B0GT69 TSL:5CDS 5' incomplete
ENSMUST00000208386.2Col4a1-204416No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000130488.3Col4a1-202676No protein-
 
Retained intron
-TSL:5
ENSMUST00000209000.2Col4a1-205604No protein-
 
Retained intron
-TSL:NA
Statistics

Exons: 53, Coding exons: 51, Transcript length: 6,487 bps, Translation length: 1,562 residues

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000209735.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.