Mouse (GRCm39)
Description

protocadherin 9 [Source:MGI Symbol;Acc:MGI:1306801]

Gene Synonyms

1500001L12Rik, A730003J17Rik, C530050I23Rik, C630029H24Rik, LOC382930

Location
About this transcript

This transcript has 4 exons, is annotated with 56 domains and features, is associated with 46665 variant alleles and maps to 233 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000195826.6Pcdh9-20865211237aaENSMUSP00000141396.2
 
Protein coding
CCDS36992F8VPK8 Ensembl CanonicalGENCODE basicTSL:5
ENSMUST00000193901.6Pcdh9-20461271203aaENSMUSP00000141759.2
 
Protein coding
CCDS79350A0A0A6YWY8 GENCODE basicAPPRIS P1TSL:1
ENSMUST00000192221.6Pcdh9-20251611038aaENSMUSP00000142260.2
 
Protein coding
CCDS79352A0A0A6YY37 GENCODE basicTSL:1
ENSMUST00000195376.6Pcdh9-20750961195aaENSMUSP00000142224.2
 
Protein coding
CCDS84156A0A0A6YY09 GENCODE basicTSL:5
ENSMUST00000068992.8Pcdh9-20137141237aaENSMUSP00000070935.3
 
Protein coding
CCDS36992F8VPK8 GENCODE basicTSL:1
ENSMUST00000194056.2Pcdh9-2053014873aaENSMUSP00000141602.2
 
Protein coding
A0A0A6YWM0 TSL:2CDS 3' incomplete
ENSMUST00000194129.2Pcdh9-20635485aaENSMUSP00000141205.2
 
Protein coding
A0A0A6YVP5 TSL:5CDS 5' incomplete
ENSMUST00000192817.2Pcdh9-203656No protein-
 
Retained intron
-TSL:NA
Statistics

Exons: 4, Coding exons: 4, Transcript length: 5,161 bps, Translation length: 1,038 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS79352

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000192221.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.