Mouse (GRCm39)
Description

SMG5 nonsense mediated mRNA decay factor [Source:MGI Symbol;Acc:MGI:2447364]

Gene Synonyms

Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)

Location
About this transcript

This transcript has 12 exons, is associated with 1230 variant alleles and maps to 217 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchFlags
ENSMUST00000001451.11Smg5-20144481017aaENSMUSP00000001451.6
 
Protein coding
CCDS38480Q6ZPY2 Ensembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENSMUST00000192009.2Smg5-2021010180aaENSMUSP00000141650.2
 
Nonsense mediated decay
A0A0A6YWQ7 TSL:5CDS 5' incomplete
ENSMUST00000193224.2Smg5-207833No protein-
 
Protein coding CDS not defined
-TSL:5
ENSMUST00000193007.2Smg5-205778No protein-
 
Protein coding CDS not defined
-TSL:3
ENSMUST00000192057.6Smg5-2033119No protein-
 
Retained intron
-TSL:1
ENSMUST00000193097.2Smg5-206830No protein-
 
Retained intron
-TSL:3
ENSMUST00000192377.6Smg5-204769No protein-
 
Retained intron
-TSL:5
ENSMUST00000194942.6Smg5-209751No protein-
 
Retained intron
-TSL:5
ENSMUST00000194359.2Smg5-208424No protein-
 
Retained intron
-TSL:2
Statistics

Exons: 12, Coding exons: 0, Transcript length: 3,119 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000192057.6

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.